Treat shapes separately from regular handwritings made by the pen tool!
Drawing shapes such as boxes or ovals around handwritings for highlighting certain words or phrases causes inaccurate handwritings recognition in GN5. The reason seems to be that GN5 treats shapes drawn by the shape tools just like regular handwritings made by the pen tool, unlike Notability.
The only workaround seems to be only using the highlighter tool for emphasizing certain text since GN5 doesn't consider highlighters as text to be recognized, but the highlighter tool doesn't offer precise thickness control unlike the pen tool.
Notability seems to treat both the highlighter and the shapes differently to the handwriting made by the pen tool and it DOES recognize handwritings correctly as text even if additional shapes are drawn around them.
I hope GN5 adopt the same way regarding the mixture of handwriting by the pen tools and shapes by the shapes tool.
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Tom Lowe commented
That would work with a separate layer for geometric shapes or any other object to be treated as a unit. Stickies would work well with this structure, too, I think.
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