Goodnotes allows you to set a return line height to match a template's line width, so that when you click the "return" button in the zoom window it moves down the page the right amount to begin writing on the next line.

However, Goodnotes does not allow one to set a default "indent" setting for that template. Templates with margins -- for instance Cornell -- would be much more useful if the user did not have to manually set the indent each time / on each page of a notebook.